Main / Simulation / Splicemap



Name: Splicemap

File size: 556mb

Language: English

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SpliceMap. SpliceMap is a de novo splice junction discovery and alignment tool. It offers high sensitivity and support for arbitrary RNA-seq read lengths. Latest News: SpliceMap -- Faster and more accurate read more strongly recommend that you consult the tutorial before attempting to use SpliceMap. 5 Apr Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Au KF (1), Jiang H, Lin L, Xing Y, Wong WH. Author information.

16 Sep GitHub is where people build software. More than 27 million people use GitHub to discover, fork, and contribute to over 80 million projects. Alternative splicing is a prevalent post-transcriptional process, which is not only important to normal cellular function but is also involved in human diseases. The following function can be used to call the SpliceMap binaries. We recommend to use the QuasR package instead of using SpliceMap directly. The QuasR.

A free web server for inspection of evolutionary conserved splice sites. The help- page gives details on the input format and interpretation of the output. Example. SpliceMap is a pure implementation of the split-reads alignment algorithm. 25bp half-reads are mapped to the genome with with either Bowtie, Eland or SeqMap. Detects splice junctions from RNA-seq data. SpliceMap does not depend on any existing annotation of gene structures and is capable of finding novel splice. 14 Jun SpliceMap has just been released. The main change is significant improvements to sensitivity when aligning long RNA-seq reads. Junior Member. Location: Stanford, CA. Join Date: Mar Posts: 7. Lightbulb SpliceMap: New tool for detecting splice junctions from RNA-Seq data.